First Round
1. Washington Nationals (Protected)
2. Pittsburgh Pirates (Protected)
3. Baltimore Orioles (Protected)
4. Kansas City Royals (Protected)
5. Cleveland Indians (Protected)
6. Arizona Diamondbacks (Protected)
7. New York Mets (Protected)
8. Houston Astros (Protected)
9. San Diego Padres (Protected)
10. Oakland Athletics (Protected)
11. Toronto Blue Jays (Protected)
12. Cincinnati Reds (Protected)
13. Chicago White Sox (Protected)
14. Milwaukee Brewers (Protected)
15. Texas Rangers (compensation for not signing Matt Purke) (Protected)
16. Chicago Cubs (Protected)
17. Tampa Bay Rays
18. Los Angeles Angels (compensation for the Mariners signing Chone Figgins)
19. Houston Astros (compensation for the Tigers signing Jose Valverde)
20. Boston Red Sox (compensation for the Braves signing Billy Wagner)
21. Minnesota Twins
22. Texas Rangers
23. Florida Marlins
24. San Francisco Giants
25. St. Louis Cardinals
26. Colorado Rockies
27. Philadelphia Phillies
28. Los Angeles Dodgers
29. Los Angeles Angels (compensation for the Red Sox signing John Lackey)
30. Los Angeles Angels
31. Tampa Bay Rays (compensation for not signing LeVon Washington) (Protected)
32. New York Yankees
Supplemental First Round
33. Houston Astros (compensation for Type A Jose Valverde)
34. Toronto Blue Jays (compensation for Type A Marco Scutaro)
35. Atlanta Braves (compensation for Type A Mike Gonzalez)
36. Boston Red Sox (compensation for Type A Jason Bay)
37. Los Angeles Angels (compensation for Type A John Lackey)
38. Boston Red Sox (compensation for Type A Billy Wagner)
39. Toronto Blue Jays (compensation for not signing James Paxton) (Protected)
40. Los Angeles Angels (compensation for Type A Chone Figgins)
41. Tampa Bay Rays (compensation for Type B Gregg Zaun)
42. Seattle Mariners (compensation for Type B Adrian Beltre)
43. Detroit Tigers (compensation for Type B Brandon Lyon)
44. Texas Rangers (compensation for Type B Marlon Byrd)
45. St. Louis Cardinals (compensation for Type B Mark DeRosa)
46. Colorado Rockies (compensation for Type B Jason Marquis)
47. Detroit Tigers (compensation for Type B Fernando Rodney)
48. Texas Rangers (compensation for Type B Ivan Rodriguez)
Second Round
49. Washington Nationals
50. Pittsburgh Pirates
51. Atlanta Braves (compensation for the Orioles signing Mike Gonzalez)
52. Kansas City Royals
53. Cleveland Indians
54. Arizona Diamondbacks
55. Boston Red Sox (compensation for the Mets signing Jason Bay)
56. Houston Astros
57. San Diego Padres
58. Oakland Athletics
59. Toronto Blue Jays
60. Cincinnati Reds
61. Chicago White Sox
62. Milwaukee Brewers
63. Chicago Cubs
64. Tampa Bay Rays
65. Seattle Mariners
66. Detroit Tigers
67. Atlanta Braves
68. Minnesota Twins
69. Toronto Blue Jays (compensation for not signing Jake Eliopoulos)(Protected)
70. Texas Rangers
71. Florida Marlins
72. San Francisco Giants
73. St. Louis Cardinals
74. Colorado Rockies
75. Philadelphia Phillies
76. Los Angeles Dodgers
77. Toronto Blue Jays (compensation for the Red Sox signing Marco Scutaro)
78. Los Angeles Angels
79. Tampa Bay Rays (compensation for not signing Kenny Diekroeger)
80. New York Yankees
Third Round
81. Washington Nationals
82. Pittsburgh Pirates
83. Baltimore Orioles
84. Kansas City Royals
85. Cleveland Indians
86. Arizona Diamondbacks
87. New York Mets
88. Houston Astros
89. San Diego Padres
90. Oakland Athletics
91. Toronto Blue Jays
92. Cincinnati Reds
93. Chicago White Sox
94. Milwaukee Brewers
95. Chicago Cubs
96. Tampa Bay Rays
97. Seattle Mariners
98. Detroit Tigers
99. Atlanta Braves
100. Minnesota Twins
101. Texas Rangers
102. Florida Marlins
103. San Francisco Giants
104. St. Louis Cardinals
105. Colorado Rockies
106. Philadelphia Phillies
107. Los Angeles Dodgers
108. Boston Red Sox
109. Los Angeles Angels
110. New York Yankees
Supplemental Third Round
111. Toronto Blue Jays (compensation for not signing Jake Barrett)
112. Chicago White Sox (compensation for not signing Bryan Morgado)
113. Los Angeles Angels (compensation for not signing Josh Spence)