Here's a quote from special assistant to the GM (and SABR member) Tony Blengino:
The statistics add another level. It shouldn't be scouting against numbers. Successful organizations have to find a way to blend the two. It's our responsibility to blend the two. ... Our own [statistics] are easily adjustable measures as they build in nature of our pitching staff and our defensive positioning. There's a margin for error with positioning with many of the public metrics. If you over-shift quite a bit, the shortstop may have skewed out of zone ratings. ... To properly evaluate teams have to know the context of how those numbers are generated. So, we use our own metrics to account for that.
There's plenty of other interesting stuff in the article, so definitely read the whole thing, but the gist is that the Mariners are among quite a few teams that are actively trying to quantify things that until recently have been based on eyes and scouting reports. Perhaps the most popular of the publicly available defensive metrics is Ultimate Zone Rating, and the Mariners have gone from 20th in UZR last season at -20.9 runs to second-best in UZR this year at +52.1 runs.